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The Science of Enzymes

Written by: Sacha Dunn

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Published on

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Time to read 5 min

Why Biology Beats Bleach.


Most traditional cleaning relies on "blunt force" chemistry—using high pH, solvents, or oxidizers like bleach to break down messes. It’s effective, but it’s aggressive.


Enzymes offer a different path. Instead of blasting a surface, they use targeted biological reactions to dismantle stains at a molecular level.

What Are Enzymes?


Enzymes are specialized proteins that act as biological catalysts. Their job is to speed up chemical reactions that would otherwise happen very slowly. In the context of cleaning, they are designed to "digest" organic matter—turning complex stains into simple, water-soluble pieces that can be rinsed away.

Stack of Laundry

The Lock and Key Method

Enzymes are highly specific. Each type is shaped to fit a specific kind of molecule, much like a lock and key. This means they don't just attack everything in their path; they only react with their intended target.

Proteases

Snip apart protein chains 

(think: grass, blood, or egg).

Amylases 

Break down starches 

(pasta, chocolate, or baby food).

Lipases

Dismantle fats and oils 

(butter, grease, or skin oils).

Mannanases

Target the gums and thickeners found in many processed foods 

(ice cream or salad dressing).

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The Specificity of Enzymes

Because enzymes are so specific, they allow for a much more sophisticated approach to cleaning:

  1. Lower Temperatures: Enzymes are most active at lukewarm temperatures. This allows for effective cleaning without the need for energy-intensive hot water.
  2. Fiber Awareness: Because proteases are designed to break down proteins, they are highly effective on organic stains like food or grass. However, they can also weaken protein-based fibers like wool and silk over time. This is why enzymatic cleaners are ideal for cottons and synthetics, but should be used with caution on delicate animal fibers.
  3. Skin Sensitivity: Traditional heavy-duty cleaners often rely on aggressive surfactants or harsh pH levels to break down stains, which can leave irritating residues on clothing. Because enzymes are highly targeted—only reacting with specific stain molecules—they allow for effective cleaning with gentler, skin-friendly formulas that rinse away completely.
  4. Biodegradability: As proteins, enzymes are inherently biodegradable. Once their job is done, they break down into amino acids that are easily processed by the environment.
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The Performance Reality


The shift toward enzyme-based cleaning isn't just about safety; it’s about efficacy. Research published in the Journal of Surfactants and Detergents reports that adding enzymes to detergent formulations improves removal of common food and body soils, especially complex organic stains.


By moving away from bleach and toward biology, we get a cleaner that is scientifically superior without the need for harsh, reactive chemistry.

Stack of laundry

Where Do Cleaning Enzymes Come From?

The enzymes used in modern cleaning products aren't extracted from plants or animals. They're produced through industrial fermentation, a controlled biological process that's been refined over decades.


The Fermentation Process

Most cleaning enzymes are made by cultivating specific strains of bacteria or fungi in large fermentation tanks. These microorganisms are selected (and sometimes genetically optimized) because they naturally produce high quantities of a desired enzyme.

Here's the basic process:

  1. Strain Selection: Scientists identify a microorganism—often a bacterium like Bacillus species or a fungus—that produces the target enzyme efficiently.
  2. Fermentation: The microorganism is grown in a nutrient-rich liquid medium inside industrial bioreactors. As it multiplies, it secretes the enzyme into the surrounding liquid.
  3. Harvesting: Once fermentation is complete, the cells are separated out, and the enzyme-rich liquid is collected.
  4. Purification and Stabilization: The enzyme is concentrated, purified, and often stabilized with protective coatings or additives to ensure it remains active during storage and use.
  5. Formulation: The purified enzyme is blended into cleaning products at carefully controlled concentrations.

This method is scalable and consistent, and avoids the need to extract enzymes from biological tissue.

The Engineering of Stability: Why Formulation Matters

It is one thing to produce a high-quality enzyme; it is another to keep it "alive" in a bottle of cleaning solution. Because enzymes are biological proteins, they are inherently sensitive to their environment. If a cleaning formula is too acidic, too alkaline, or contains certain aggressive surfactants, the enzymes can denature—essentially unfolding and losing their ability to function.


  • The Challenge of Coexistence. In a multi-enzyme formula, a unique challenge arises: protease-on-enzyme "cannibalization." Since proteases are designed to break down proteins, and all enzymes are made of protein, a protease can theoretically "digest" the other enzymes in the bottle (like amylase or lipase) before they ever reach your laundry. To prevent this, formulators use stabilization strategies so enzymes don’t break each other down or denature in the bottle. Coatings, encapsulation, and carefully controlled formula conditions help keep them inactive and protected until they’re diluted in the wash water.
  • Synergy: The 1+1=3 Effect. Modern cleaning science also focuses on enzymatic synergy. While a single enzyme targets a single stain type, most real-world messes are "complex soils"—a mixture of fats, proteins, and starches. For example, a spaghetti sauce stain contains fats (oil), proteins (meat), and starches (pasta). Research shows that using a "cocktail" of enzymes is more effective than the sum of its parts. When a lipase breaks down the oily outer layer of a stain, it "opens up" the structure, allowing the protease to reach the protein core more effectively. This synergistic approach is why modern, high-performance formulas can achieve a deep clean with significantly lower concentrations of total active ingredients compared to traditional, non-enzymatic cleaners.
  • The Future: Directed Evolution. The next frontier in enzyme science is directed evolution—a process that won the Nobel Prize in Chemistry in 2018. Scientists can now "evolve" enzymes in a lab setting to be more resilient to heat, more stable in hard water, or more effective at ultra-low temperatures. This means the future of cleaning isn't just biological; it’s increasingly precise, allowing us to move even further away from the blunt-force chemicals of the past.

A Brief History of Enzymes in Cleaning

Enzymes weren't always part of the cleaning toolkit. Their use in laundry detergents began in the 1960s, when European manufacturers started adding proteases to boost stain removal on protein-based soils like blood and grass.


Early enzyme detergents were powerful but had drawbacks. Some formulations caused skin irritation or respiratory issues in factory workers due to airborne enzyme dust. By the 1970s and 1980s, manufacturers developed encapsulation and granulation techniques to make enzymes safer to handle and more stable in liquid and powder formulas.


Today, enzymes are a cornerstone of high-performance, low-temperature cleaning. They're used not just in laundry detergents, but in dishwashing liquids, surface cleaners, and even industrial applications like textile processing and wastewater treatment.


The shift toward enzyme-based formulas reflects a broader trend in chemistry: using biology to do what brute-force chemicals used to do, with better precision and less environmental impact.

Sacha Dunn

Sacha Dunn

Sacha Dunn is the founder of Common Good. A former stylist, she writes about sustainable living, everyday life, and choosing quality over excess.